bioinfomed

M1 & M2 - BBC (Bioinformatique et Biologie Computationnelle) + others
UE Omiques, UE Atelier Omiques

Basis in Metagenomics and Barcoding. Genomes assembling

Biology knowledge, Next Generation Sequencing basis. A computer is required for the tutorials, so bring your own laptop. You can also bring your laptop for the courses session to follow the online lectures or to see some websites mentioned during the teachings.

• M1 (+BBC+genetic) - Tuesday October 28th | 15:15 - 17:15 (2 hrs) | UE15 “Technologies omiques” - date to confirm -
  
  
  • Where : Valrose campus, room xxx, building “TP Sciences Naturelles”
    
    
  • Presentation of the bioinformatics service of IRCAN
  • Courses: Introduction to MetaGenomics + figure analysis
    

• M1 BBC - Thursday October 30th | 14:00 - 17:00 (3 hrs) | UE01 “Atelier omique” - date to confirm -
  
  
  • Where: Valrose campus, room xxx, building “TP Sciences Naturelles”
    
    
  • Tutorial: Metagenomics, identification of species using 16S barcoding on Galaxy

• M2 BBC - Monday November 17th | 9:15 - 13:15 (4 hrs) | “ECUE Biologie computationelle des données omiques ” - date/hrs to confirm -
  
  
  • Where: Valrose campus, room xxx (Sc. nat. building)
    
    
  • Tutorial: NGS assemblies by command lines: quality tests, trimming, assembling with Minia & Velvet and orfing
    
    

• NGS and genomes assemblies
• Tutorial: NGS assemblies

• Introduction to MetaGenomics

• Tutorial : Metagenomics : identification of species using 16S barcoding

Other:

• Sequences searching
• Oligomers design